Chromatin Immunoprecipitation:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
DNA Purification:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
Imaging:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
Conjugation Assay:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
Gas Chromatography-Mass Spectrometry:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
Polymerase Chain Reaction:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
Purification:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
Sample Prep:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
DNA Sequencing:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
RNA Sequencing:Article Title: Cystine import and oxidative catabolism fuel vascular growth and repair via nutrient-responsive histone acetylation.
Article Snippet: Compound Sakura Cat#4583 TRIS Roth Cat#AE15.3 Triton X-100 Sigma-Aldrich Cat#9002-93-1 Trizol QIAGEN Cat#79306 trypsin Biochrom Cat#L2103-20G Trypsin-Inhibitor Applichem Cat#A1441,0250 (Continued on next page) e4 Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER TURBO DNAseI Thermo Fisher Scientific Cat#AM223 U-13C16-palmitic acid Cambridge Isotope Laboratories Cat#CLM-309-PK Critical commercial assays Chromatin IP DNA Purification Kit Active Motif Cat#58002 Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 488 dye Thermo Fisher Scientific Cat#C10337 DyLight 405 Conjugation kit Novus Biologicals Cat#ab201798 EZ:faast GC-MS Physiological, Amino Acid Analysis Kit Phenomenex Cat#KG0-7166 FITC Annexin V Apoptosis Detection Kit I BD Pharmingen Cat#556547 Illumina Tagment DNA TDE1 Enzyme and Buffer Large Kit Illumina Cat#20034198 MycoStrip – Mycoplasma Detection Kit Invivogen Cat#rep-mys-10 QIAquick PCR Purification Kit QIAGEN Cat#28104 SMARTer Stranded Total RNA Sample Prep Kit HI Mammalian Takara Bio Cat#634873 ThruPLEX DNA-Seq Kit Takara Bio Cat#R400674 VAHTS Universal Stranded mRNA-seq - V6 Vazyme Cat#NR604 Zymo ChIP DNA Clean and concentrator Kit Zymo Research Cat#D5205 Deposited data RNA-seq data This paper GEO: GSE305819 ATAC-seq data This paper GEO: GSE305823; GSE305822 Ribotag-seq data This paper GEO: GSE305827 CUT&RUN/Act-seq data This paper GEO: GSE305820; GSE305824; and GSE305826 Proteomics data This paper PRIDE: PXD068385 Raw data This paper Data S1 Experimental models: Cell lines Human: umbilical vein endothelial cells (HUVEC) Lonza Promocell Cat#C2519A; #C2517; #00191027; Cat#C12203; #C12200; #C12205 Human: 293 American Type Culture Collection (ATCC) Cat#CRL-1573 Lenti-XTM HEK 293T Takara Cat#632180 Experimental models: Organisms/strains SLC7A11 fl/fl xPdgfb-CreERT2 Shanghai model Organisms And The Jackson Laboratory C57BL/6Smoc-Slc7a11em1(flox)Smoc: Cat#NM-CKO-2117850B6.Cg-Tg(Pdgfrbcre/ERT2)6096Rha/J: Cat#029684 PdgfbCreERT2 The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J; Strain#029684 CSE fl/fl xPdgfb-CreERT2 This paper N/A CSE fl/fl xCdh5-CreERT2 https://doi.org/10.1161/CIRCULATIONAHA. .. 118.034757 N/A FUCCI Riken Bioresource research center B6.Cg-Tg(FUCCIS/G2/M)#504BsiTg (FUCCIG1)#596Bsi; Cat#RBRC02892 WT mice (C57BL/6JRj) Janvier Labs C57BL/6JRj Mouse - Janvier Labs Recombinant DNA pCDH-CMV-3xFlag–human-ATF4-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-CSE-copGFP Synthetized by Genomeditech, Shanghai, China N/A pCDH-CMV-3xFlag–human-SLC7A11copGFP Synthetized by Genomeditech, Shanghai, China N/A (Continued on next page) Cell Metabolism 38, 1–20.e1–e20, January 6, 2026 e5
other:
MTT Assay:
Proliferation Assay:
Lysis:
LDH Cytotoxicity Assay:
Activity Assay:Article Title: Siah2 regulates lipid uptake in adipose tissue macrophages
Article Snippet: Nitrocellulose membranes (Bio-Rad, 0.2 μm) were incubated with primary antibodies for 1 to 2 h at room temperature or overnight at 4°C, followed by 1 h incubation with secondary antibody at room temperature. .. CTSK activity in BMDMs and BM-ATMs was measured using the Cathepsin K assay kit (Novus Biologicals, catalog no.: NBP2-54842) according to the manufacturer’s protocol. ..
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